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Medical pedigrees with TeX and PSTricks

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Automatisierte Medienanalyse

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what and this is the author of this book resented the change for me and there are many course so we discussed a previous version of this program 2 years of all that that that that conference and so if you win the what into the graphics companion sent you a much of friend by the way for this and so if I was out from the beginning and just those of you who are now so it's and about it we probably do more but if I would assume that that is what do not know most about what the previous version and just discussed what you is the uh I probably would war that part of the audience so what a little uh ideal briefly describe what do in I don't want to talk much about algorithms is it was so it was a lot of room for all the work so which 1 can this but I will just say OK theory our fine manually and you will find there as much about about all the as you want and what they don't like you just don't what to the what was in room new future can go into a new possibilities and then since that time I view of have some small demonstration and uh by the way for the demonstration I need a volunteer so I don't give you time him with you want to here and OK let's start from the beginning if you will ever come to adopt the worst news that anybody you see this 1 of the screen over the doctor would on is you will so he or she will ask a lot all 4 of them on the questions about you appearance about your the heats about your brothers about your systems needs Nepusz forms uh everybody I ask of my liberated area of murder of how over the use the the interview common neural tube and you usually talk about and transfer was everyone the makeshift can remember and you can interview rule 0 just about there somebody he doesn't remember but very much but it's even better the more you the but so that if you have a chance to now your genome gene I will do up to the 13th century you would do you would make you look the way you have a right to know all the volume and whatnot low shoulder people with this information the loses it should have been a rule so I said that this think is wrong this it's a complex pedigree but because it's what the user said even that's that's the what is it's now understand that this is not the language that is pretty simple degree is blissfully feature was it will hold information about your relatives of labor in the story uh and because a certain formal highly formal language for example of the squares on my own view of circles of you know they might be fields that have both went of the the of their the health you that some diffuser in looked at uh once about this uh 1 the book now there are some civil war or or for worse and some of the some symbols for you you were in the dialog manager and law and what are the means of action if you use the reference to the side they show and it's much smaller than the standard error of the XML standard but it's this morning as I uh and if you think about this it looks like you know logically but it's much more than that it was general ordered the use of the over all you would Dongdong and here you can spherical will woops which makes it very difficult to have several rules and I did not do this just for out for conference I but what type of all this is an Irish surname it was included in the paper in this paper sold some would use its incidence of a URL usually people just figures information from the and manually labeled for all the circles squares and lines on paper and it takes a lot of time and a lot of effort to move with rocks shape so you would you like these and some of them it's forward especially if you want to punish uh the if you look at the European use that the published being of medical journals symmetrical books some of them are you well done some of them are less well than there are some school looked school no way well aware of well play some of the newer generation although available the chair should makes his students to do well but I think she's in memory you so we wanted to make a program that will lose those of the just like this at the and from the beginning numbers this very difficult to automatically because was resolved the complexity for making of the lights of its ladies of migratory and what should you don't have be there so long as they operate with good I mean who who are on the way approach much like those appointed manager told in the 1st lecture today just have some information about the relative I call the database it would be ASCII I unfortunately for most of his vision that Excel spreadsheet so I want to show you that we are unfortunately Excel oriented you might this big employers and from this that you can manually my uh that file so you can make it the highest expected she's markers which states for the use of persons with the person here use another person with another person here will place all the lines for of seedlings for of arms so that and so on you can make it that file you can process this is that these links and you get a nice both the media and you can
publish you can log and you can see that and since it's about instead of the more important as much as 1000 years of his presence and labor but still if you like to make a program I will here and do this for a program you can't read your data and make it that far and it's very difficult it's the usual so 98 situation it's very easy to make 80 per cent of what it was like a program which will make 80 per cent of the degrees of it's very difficult to make a real remaining friends person degrees so instead all would you ever hear this it'll be let's make 80 % by and for the remaining 20 % you might some adjust some of you will that the file might adjustment get it done OK so those are the little bit about that part well that's why is the of the base you know obviously you fact that workshop in Sunday's you have that a lot of today uh basically as they do you have malls as you have connections so with you from the point of view and you should be the the graph you have more on the graphical connections and you need markers the mole and macroscopic connection Mozart persons who abortions that special symbols for inference about managers and so on so we have a metaphor or something you can see my own perfume my own adoptive of effective which means that some disease and a lot of other things here you see for example of this is a symbol for a pregnant female this is a symbol for a mile diet of his 20 years and so on and for the relationship and this Reulsts lines we share our the mole connections form of the cost the language so here we have just the square mile and the here we have a pair of male and female call them most and is on something collection which is the relation of the uh which is marriage of chips like the presence of 2nd present whatever and here's a couple and here are some examples for example you use a postfix all and those who were forced to explore the use of use speaks to the figure nice code is that what's the person another person you have all the some election and here you have a few which has 1 a go to uh book the 1 of natural sounds and that some of miscarriage some of the life he is uh marriage which you have children do you understand me and he is a more what's the diagram you have a margin infrared and ginger Richard John Wiley and the level of Mr. H of great of these uh y is walls this is a simple should think that the cost of use of the a symptomatic which he has something that in this year's but how so you can see for all In this instance you can just analyze funded How would be about that most this is you want to read for it was places the he is a separation from have means the use of tools we start 1 is it would've been it's all identical means a novel limited norms and again that's nice matters of services and was this model has yeah robot 1st which means sometimes it it's as you see it little markers and if you now and in technicians it 2nd right Marcus for the the now let's talk about again I don't know the I expect some positions and some genetic research is to be able to write their roles like this I don't expect all of them to do so what would the 1st this is a form of of input data and tools of the bloom want is not small you understand but normally it would be an Excel spreadsheet and excel on this thing that book so this is the last form of restriction as you see you have wants he she will say something about the the line is your son you say it's male or female date of birth date will be equal the mother and father of dictionaries for 2 lines of X Open due to automatically for you you just in that in Excel and just think of he's a master he's a parts it in asking that you just need to by being so I can use that i is the number of moles forces of I am certain that the junk and you can write for you yeah nice program which would do all of these automatically would just be able to print reversal of as the number of homes could be different there's a problem is smart enough for you to understand what's going on and it looks at this and make something like this so for if you look at the example Jožef the Johnson meet user is of loss of database and here is the result of this database right I some history of some of the needs of the programmer at now and with the magical scale and you can say I have a 4 way part would have let the paper the scales of Italy for me in can do over Beijing a lot of the degrees especially if you know a lot about would be but what about if you know a lot about your of siblings about the news is that and so on but you are not sure about your brand grandfather's so you better would be white but
not to all it means that in many cases quadrant will update your to point where it can work dates it can go what they holds a place of shots shot is a very informal learn what they want to say from the point of view what mathematicians the all existing users the but many people say that they use something which 1st all just 1 if you will have this degree because schools because there is a family of SME feminine and Brown family and it's natural don't you a shot somewhat coupled the something to use which have several holds but still it's like the man who reinvented an algorithm for automatic brewing it was really a fun part of courses the now some new thinks the now the automatic the temple these something which is not in the Gaussian which is described in graphics if you see that here just a jet and Mike are to means George drawn engine also means we can work is map now what it a couple words about problems I would also say so explain why the 1st hard problem these wants and we were constantly marriage wasn't being acknowledge and manage between forever flight marriage between the and between these and the uncle here all between presence here why needed pot most of thinking of things and you think of all the things maybe all of its for automatic was things from the paper are because of you pull from level to level and if you mathematician you immediately that because of this means that you can have loops because if you have lots this very difficult to make the batch the the point of considering the managers is that you have all you can will do the same point several different what is our close situation distance and well we can do it using of let intuitive something really not to talk about what the what what what little you might think twice and then we do need X-terminals so if you if you look at lower here you see that it should be splits the reason why it's so this is a problem just make here and here and then digital 1 I gave you can manually losers so you can just think that file and just move your it be lower but I just didn't want to do with Europe was a wanted to show you emphasis of very simple solution when you have so many children from considering mergers you will see something 3 years you it's a bit of a problem by it said result in the sense that in most cases it doesn't prior unless you are curious and the jet and will really should be here the another problem we should put absolutely unsolvable these what they call the borders all now unfortunately we don't have any which people in the audience and that's on the Athenian people the you might now was this from was formed by other miscarriage about old lithium wilderness will that be the results 3 my 2 sons the he sends them so he sent 1 of his sons to Arusha to read the beech forests and a whole he said the not assigned to join to being and the consumer and the 1st sound was sent to poland to bring the best thing for 1 the best features which right a great watch woman and what happened you can this is the whole returned this footage rights of it's very nice stories and where it's the problem for us well let's that make it is the I can put all border small problem and so we use here using his 1st son and which life 2nd son than which life works on right and then someone will say OK I want to show all his ability of all whoosh rights here and so great I do for us and most these slides here it will be more difficult here it was used you want to all of our model to the left and the model the right but I can choose each can take these female and put it here and put you all fuel father mother and so on but what can you do this there is absolutely no place to go for us a model in which be was it's was that is a problem for of manual supervision minded people just for you can be here and just put some lines like this you can do this program circuit and then you'll have a lot of self intersection of problem and by the it wasn't able to make these were nice but there were a character to more people but but I look at the medical journals and then that the school that also can sold method was also from which they use these things like this is still have self intersections and they're really really but so this is a problem Nietzsche is it was we wanted to to and exactly multidimensional on it degrees in purple dimensional the weight and this is the but we do so again this is this is a hard problem now but still have a progress that was in the 1st version you would solve it at all and just well in the 1st version of sold constantly marriages was not we can sort of know what they want to do I want to make a small demonstration and for the demonstration I
need a volunteer who wants to do and if nobody wants that will take as a and that will be there was because the
chairs if it and only if there what they want from Ontario just tell me a and it will be about your family and you make it before you want there there the is not now what is not that difficult and you will get what is needed it's easy and believe me is that I will be here and by the way I would ask you about you see this so you you that I know is this so you just something like a genealogical or version of medical if we review absolutely fell the and it's uh person and healthy and that clear OK then the act and for the the what and but it will suffer your you I so I need to put in the ideal of the M and this will be marked but I can pull those last name but there's a bit of you would be to and you'll complicates almost an hour an hour and a novel update of your it's used only who will reward people if you have siblings who walked from the of all this was the young so if you don't want to go in the world is of unit tongue in any year so as to make it consistent with this is that it can just see here just a year of because it means that I know you just 7 or 8 now do of these something they don't want and robust so horrible and user is the fence and medical name all in that use for somebody is going to start so you a problem that's what the world now let's talk about who cares about your father and not big the wrote by the I just need a name so and they were and whether the and also the hydrogens we operate with sports you join he's uh should so so the and he's for use in my own not the was also the same b but obviously you want and I need this date of birth 1916 1916 uh this he let him go on with his date of that name the named OK and let me here is go faster it will be chosen OK and uh let now all pool you must earnings progeny the only difference is that you will 1915 relating to the history it can look hold your morals this water right now so more tool you keeps it's just an little fun thing to make it simple it's the end of all your so but would like you to govern about the use of the people in their degree their such social symbols for this purpose make simple case daughter and the it just looks at the end of the world and the digital world and and she's to model and the cities and so on to serve as human was the use of rules and use them they bird the and next son of our instances most my the 1979 the so my in in the time the only OK because all of them would be the people hold all numbers what users from the which numbers used by the 19 eighties and so these in OK now let's talk about your and and all this with the
intervention of the court In in and it's orderly and just you can't you can't have half since this which shown the father of modern the options and advanced permanent of and thank you for meeting in the court in OK good and also that the date of his death in 1916 for Steve more this this is married the thank you for all the for just as in the 2000 6 the year yes so so the genes in the in the 1st thing next month and because of that it would run with it in the US model in 1988 and and he living thing so little it's not really clear what should do next is the mother of all Joe so your me yes the because look at any moment you have now and then acting upon their OK Martin OK so each symbol is still have empty the challenge going here that I since the sixties it and this is another and all these are in respect the Issachar pretend that concurrent from was all my papers they and it's Sarah the 1970 time sufficient for the trees should this resulted in what this lady and part of the system and it's and in the and you when his children the shape of the vocal Mary Mary also and this this this was the language the number of sentences and and then he is accused of general will that you use the word they need this job just getting in on it you just put in my own can hearken to circulate margin was as low as you get really for a big problem 1982 it go and the user gives off young and Gerald G. G. this on of all of this story this sort of thing it's Europe so there yeah of the it's center where much the this is on the problem like appeal something that's not OK 1 more currents the key is to use and use my own and the rights of data or and these people get Europe also us in this this is because stop here uh you think become more and more and if you're of voter doctor to really much more but but let's see what would that of this 1st we made the phone
but I
think he that follow we generated and will start from the PDF file the of think it again I'm sorry it's the amounts and form and uh it's the last 2 years for creating wants us to think that the course what the but they were
would these little
it the probably from the fifties OK you can take a look and tell me whether you made a mistake you have marked the end you have a error and the error means that your problem is that you you will you have your own father mother and this looks like a little bitty unless live that he didn't and it's very look very much complicated because we don't have any merit you you will the presence and so on so it was very be make the simple and if you go next which is actually looking at the back of the comparable questions is that should be because of alleged it those who were there when they were born and what the
was in our the entire the the you know what it is he's very simple and I would but that you will like we were minutely
you would spend much more time here we extend but much and you this the moment you can give a few of lessons performance yes in the soon not only after OK up up 80 he can more deposits that it can work use anything you want and you know edges that all right now we have 4 models English and Russian I can show you I don't know was there can be anywhere from while here let me see you the 1st is
system the received knowledge sources English the that's here on in the I think this yeah we can and now you can see as yes you use yet it's still it's it's very very was uh it's so I did some finishing
users but if you take a look at all names start in the Russian and it's obviously extensible so if you can if you want to
extend it to check or of what are the wall Hebrew novel because it's just the proper label the the yes is there any other way of doing it only and this is the end of the world the way real big well is there are several problems users and most of them are also in anxious for what to tell you about the last slide here as what you want to know what the problems are and there you just have a models
you who will want here the here the here they're all there several commercial programs no available and it also made of wood for them are doctors and book so suppose to you each user programs usually most so much of what you've got people and you probably will blue blue 70 miles and so you might get beating the laser scans and you can take a mouse and shit and then just and you make this will give me do but if you have a lot of money there are some problems that can recommend you reach uh and think there less to you but I I'm biased this this but our problems that I would like to but and that's the the you know what on which was fiction is From here on the ground of a lot of of the of the of that you might as well so what you know after the wound its it into it so you know what happens if a white pressed the 1st method that the 1st rather than going to a 2nd that usually you think people will alliance resourceful managers uh and uh and then it just showing the use of who just made is due to the 2nd marriages so there is that there is nothing conceptually more inputs the standard consumed mean marriages problem you just have so it works the yes and that would then forced by breaking the line we not yet but not in the the because of yes so when you just go but there is a problem yes 1 of the ways of solving this problem of the DVDs to make parts of them exceed bottle of seeing wage nexus see particle and sequentially and that it had the same problem as we have this breaking the displayed equations of the alliance human can this program society where the logical breaking of the jungle information ecological you go in consistent what's this manually it's easy to I don't know how the absence of that OK let me think about this and on the I'm the and so on so it was time of the last name I and so on and on something the and that the yeah but there's a new but the graphs here on the east to the degree of not as is the general graph which is all in the test is on the think it usually does something because generation you want it to be a this generation but the biggest problem of Eve the 2 where the I wouldn't have known some of my problems because it's not 3 he said it a general it's a graph of the general will lead to the program you have to direct and that's right it's all part of of which the to this is what so yes yes yes on yes yes or no fortunately this is fatal the less general graphs so we can use some solutions for this vision but the thing you to the general problem of getting a graph of paper is as of every not on so you can we do know yes yes yes and this problem here is actually uh part of these internal case you can that's how would be this useful the any other questions yes the place that have the the well so I hold will I rules a generation property is 1 last generation was the youngest there and I think it's only this is is on the rational way of doing this and other questions of great then I want of that and I want to send the topic of my work was the in this project but my collaborator attitude what where nice variable grounds and look grants from Russian of sources that don't want to all of them and I want to say that you will reach you felt this is through the grants for this uh and I want to talk all you would be in the audience and uh I promise in a year or something the next sentence I will show you some even more at nite speaks to doing it's going to it much more interactive much more of a if he's a much more user-friendly and uh we want to make it work so do women few
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Metadaten

Formale Metadaten

Titel Medical pedigrees with TeX and PSTricks
Untertitel New advances and challenges
Serientitel The annual conference of the TeX Users Group (TUG 2008)
Teil 22
Anzahl der Teile 33
Autor Veytsman, Boris
Akhmadeeva, Leila
Lizenz CC-Namensnennung 3.0 Unported:
Sie dürfen das Werk bzw. den Inhalt zu jedem legalen Zweck nutzen, verändern und in unveränderter oder veränderter Form vervielfältigen, verbreiten und öffentlich zugänglich machen, sofern Sie den Namen des Autors/Rechteinhabers in der von ihm festgelegten Weise nennen.
DOI 10.5446/30788
Herausgeber River Valley TV
Erscheinungsjahr 2012
Sprache Englisch
Produktionsort Cork, Ireland

Inhaltliche Metadaten

Fachgebiet Informatik
Abstract A medical pedigree is an important tool for researchers, clinicians, students and patients. It helps to diagnose many hereditary diseases, estimate risks for family members, etc (Bennett, Steinhaus, Uhrich, O’Sullivan, Resta, Lochner–Doyle, Markei, Vincent, and Hamanishi, 1995). Recently we reported a comprehensive package for automatic pedigree drawing (Veytsman and Akhmadeeva, 2006; Veytsman and Akhmadeeva, 2007). Since then we extended the algorithm for a number of complex cases, including correct drawing of consanguinic relationships, twins and many others. In this talk we review the facilities of the current version of the program and the new challenges in computer–aided drawing of medical pedigrees. We try to make the talk interesting to TeXnicians and TeXperts by discussing the experience of and the new challenges in computer–aided drawing of medical pedigrees. We try to make the talk interesting to TeXnicians and TeXperts by discussing the experience of design a TeX–based application working in a “real world”.

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