Introduction to Gene Wiki: Using wikidata items on citations to capture evidence and provenance.

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Introduction to Gene Wiki: Using wikidata items on citations to capture evidence and provenance.
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hello good morning. the republicans futility of g.d.p. key project or overall hundred beds and be met through to their our call will be made law and of wagner's to use of biomedical computer scientist by training but it also on the ending where the area is part of the gene. you got sick which is of course of that into labour asia. the rental leverage regained and eventually life sciences more accessible to people. i did all his vision human presence in the genetic code in the introduction bottled oxygen will then continue to more handle station where we invite the audience to jonathan to search for an item in the uk dollars all the article using do your due to begin a guide on the meter reader for example. that means such this elegance his orders that is all the awful train to all and its flow that article using school you really having a twenty minute dollar by questions machines will generate which will be followed by around of her imminent workshop and. well so i have given us to do and roar and all you can be used to questions union has said jean became a you can use a telegram channel you can continue questions only you to chat and also you can you are used to all their lives are available for everything. which is the jewel it an insanely bad and if you want to get any comments there are few so i look for too long. and if you dig in charge on.
i are all thank you for are inviting me as i am letting and having a discussion about the introduction of water on generic year and how we can use which the data to leverage.
citations scholarly articles as references in in which he did die. this is allied this is a life session is being streamed on. screaming sessions. to let you that you are if you want to ask a question you can do so by who commands and i will try to respond on the commands and during the handsome session where we will take wikipedia articles extract the oil references from that which is the article added to which he did that. and its anything goes wrong use the common or you need for respiration use the comments. channels of the discussion generals to the chat.
so ask. so. starting off with his aging the jury to project his project started in two thousand and eight and with than a focus on wikipedia. the aim was at the time was to create a wikipedia articles for every human gene when the english wikipedia. and we did at wikipedia article i asked. but that was developed in involved also adding structured date that to wikipedia article in the end for boxes are on wikipedia page where you would create. some lengths to external they'd basis. and and summarize knowledge from crowdsourcing having referee had preferences so having all their having a style which is what we saw in previous light which has on starting information on the human genome and the article. the articles grow into full fledged the articles which is which is nice. we can easily get that information the problem of the issue with a wikipedia articles that reader of human reader can easily grasp what is being expressed here so if the information comes into its knowledge for anderson wikipedia article and as someone else at and that information. as additional knowledge to do with a good article that's that's that's interesting to know but to to assess and process is it really really reading is is necessary but. this doesn't scale human scandal humans can read it but processing and or asking subsequent question so our year we have for example expression of approach to year. plans to schizophrenia if you don't want to explore extract other proteins order relationships etc you has to go to all we could be articles are out there. wikipedia is also a language not the language. community projects ogre it there are more than three hundred language wikipedia s. and the knowledge. when knowledge. is not his it's different depending on where to come you were the information is coming from here i have an example of for example and the info box that is extracted from the dutch we could be a bridge into it he says he and i see the den go to his be fifty on the greek wikipedia its s. it's also be fifty with india. english there are momo to go reference a soda and more handles in the english wikipedia then there are in the dust in greek and there are other examples where the other way around. where does she keep media or the greek wikipedia has more information which is not available in english says can be said for number says so i am here isn't here is that which you get hiv virus also an island in the caribbean which is a robot and that she could be there you see difference in numbers of the population size the bending on. on where you look. so i made to add two thousand and thirteen the wiki which the data came up between the gene the project jumped on the opportunity because instead of feeding and life science knowledge to wikipedia we're now able to feed that information to which the data which. data is a similar to which he began a sense that what which the best to tax which data is to data. it is similar to which began as an said it's a collaborative edited knowledge base and is operated by the same with the media foundation that runs with the data it runs on a completely free license she zero anybody can contribute its coffers all the men's knowledge expensive item history like enriching india. and it has a high performance career engines parka which allows for ferry complex area charisma like what i sat in their previous example of software d.c. linking it is easy to a gene now. i will sparkle we're able to indeed identify all genes that are rigid multiple genes that are associated with their with the disease or vice versa. it's a stable and to price them a lot of research databases are dictated by funding cycles one of funds and sorer scholar most institute often the project a database or or ceased to exist. but by using which the data. the knowledge. this is who is for a longer time is actually being developed and it already has a large number of active users added there's and contributors. so in two thousand and fourteen. focus on and retching which india with gene from the information in human genes most do with the data we started developing boss to enrich with the data with our knowledge on genes but also on related concept to jean such as diseases proteins and citations. tudor children articles describing those genes and and often not on a portly chemical compounds that it does have an association with aging. so it's the process on how do we get the process however was the process of getting with the data in getting at a source into which the data.
the first day is a community engagement so if there is for example we want to. what will be addressed for example human genes or miles genes require we engage with the with local with a group of research community and tried to model related data sources into a. the magic model which is on which he did so. here i have some screen what some photos from previous session where we try to model various databases into area into a key data and what that happens in such a session is that different data sources are assessed and and model into which the data. once there is agreement on how debt semantic model would look.
that's the magic model is formally described so in the previous cried i showed year and get a pointer here is such a model on paper or so all these blocks are items use our properties and these are items again so this is the end product off you can you can't argue that this.
the end product of the of the initial step. don't become huge modeling of information but we need boss we need boss to act on so we need to formalize that into a was schema so.
what his team a dossier which is where did we translate translates to move from. yes they performed for two machine readable former regime's rebuffed. the map allows us to jet ledger he feels so we have to we have the model in place. check what is already on which the data would respect to the top it understood to me. it allows us to document to just kill and that is being addressed by the bots its allies us to check date every forty and been submitted into which he did at any law allows us to check whether or not. after ingestion. still essex. so here you see that we could it comes with an extension called an end to see my that allows. during these these a ski mask and here i have little example also won which is the thirty second for human gene and this is how such a scheme of the listener what we're seeing here is a increases. he was drawn s. and no action and a note services say this is what it looks like. and what is it is implemented began. slide as well as of the ski mask which use language process was fresh and fell eight to follow dates the information so once we have agreed on the spell of the scheme out and we can then check what is in in which the data which respect the human genes and when that is in place. next the next top step of the process and say in where. that's not yet in really good at seeing for my it is being added to the data. this case where this came as many years as inspiration and it used to write bought in bite and go out and that and bought will have rides will engender will our state primary sources that the were discussed in the community model and face and will then be transformed into the scheme a. as we've agreed upon bought than transform stat primary data into a shared their arm jason format or for my that is instead that is in that is being sent to do with it the a.b.i. and ingested into which the data. then in the development phase to use to gradually a gradual approach where west about is ready. we asked them to run it all on two or two five a well control items were also to monitor how the new. you item is being ingested and how we respond whether it affects other parts of the week the data ecosystem we don't encourage with that with and gradually increase the number of items being at it and once is ready and see for india for ingestion is being put into a production environment which share a room. we're using jenkins which regularly rounds say can i say what is indeed a chat with the primary sources. sony and we have a system a system wide days after going to disease ontology which is one of the sources that are being monitored and synchronizes that you did abiding the project so there is that there is a disease and biology which has is all curation cycle. and there is with the data which has its own curation cycle and a between there is just the interest is in bought see a slash community which you get a community that pushes data to with the data but also changes are being pushed back to the season quality for future creation so we have. does this constant feedback low from the disease and knowledge you do with the data. ailes currently we are at this at is this is our is our current landscape the stars had of concepts which is the of genes we have sequencer genes we have three additional aaron a pharmaceutical products local bank pounds. when. biological processes seller component protein structural most serious cetera. on the blue box s r. our results of collaborators in order research projects that are also feeding. with the data such as civic which there was the second stereotypes. biology of barclays which are place but there are also independent projects such as there is to reach site effort. and we leverage the. and a scientific articles being pushed to wiki data as well as there are some of the hazards so by war would what i'm trying to say with this landscape is that by depositing that and knowledge to wiki dates every interaction with other initiatives starts air starts happening. but am maybe i should boss and see if there are some questions. iron. but we can deliver in the q. and a so so far so far so good. when. we are currently monitoring this young but being the boss are running and are monitoring for updates in the primary sources are monitoring our dates and you get out. and. there is a the question. so what is inside the orange the so what is in the inside. that's a good question so what i've seen the these are there. types of objects and these are the properties that are being identified sell we have the example see if i didn't know i can increases but here as a gene then there is a property called agencies gene sambo there is the example. transcripts id needed is set in gene id there is and genome database of data set of died identifier specifically pointing to the resource for the she says there are the start of properties in which the data and a number of properties that access to afford a concept. so has so far so good but haven't now i'm trying to use his show here a struggle query. well that should return. they should return a list of all the oysters are currently in which the data and eight times out. and it's a familiar it's a familiar screen for frequent users of which the data sparkle is a really easy to earn an awesome career language that it allows for it allows it times out when and. there's too much data service we have here and if you live you will get a surface comes with a timeout period of one minute so if it takes more than one minute to compute the result the times out all there are too many anxious or statements in. the data that also require more than one minutes to process. so loud. and with with more and more time whilst and sometimes we can argue that there is too much information in which the data on a specific topic so how would you how would you go in. to address this issue. first of all we can try to speed up the clearest if it's complex worried try to estimates that the bomblets create multiple career is so dead a response time is less than her supported one minute but freedom to breathe air india which is the air with the data and anniversary of. i have two thousand and seventeen. which the basis of dr imich was released before that he could already installed base so that the message is if you run into timeout issues you can install which based on your own infrastructure well you can increase the number of timeouts all the number of time the. the is required to update to do to get results have struck a query and there is a recent very interesting project going on condo you be stacked which looks a bit like guitar. you can deploy your own with the base there without having to rely on doctor or order system and ministrations skills and start host in your own your own with the base.
so to get i am and i'm you have an idea and one running one of these one of such with the bases there is a big project biodiversity which leverage as crowdsourcing acts like a naturalist to identify the surrounding around us so year and this is a bit how it works the air is used in in the wild. so to speak and to have surfed. jobs earth animals plans. all species around us which is designated to the agent or in this case the eye naturalist platform which is also community a community like with the data this treaty dad annotates dead the information that is being have suffered so the day's users will get a message back us just seeing tree. x. you have just seen bird why or a set and that is highly a high quality information that can be fed into which he did at how else are you don't want to have we didn't want to have all those observations which is now running into millions into with the data because that hold outs run it would be fair. the power of it it will just be some the system by its sites so instead of running i am putting a day to india with the data set up a weekly basis. where i were on ingesting the observations from my natural as and. based on that means which i can now right to query and this to that big races late with week he did and then we can run a separate his father were eight and. this part from served on the needy surface so and from here to hear. secure it runs on on with the data days he is the information that is on the local wiki days and it looks for observations and what is clear it does its chest. it checks on all the observations that has been made in a specific area. what are those items those observations are about the species that does not have a d.v.d. article yet or pfizer's all the species that there there is rooted in the arctic or so in this case the question or bad we are interested in the eye on me. during which the articles so now using his you tube age we're able to you. identify that these species land at the time off making a slight lag would you be article or need some rico doing in which the data. so to whom to and. i still have two minutes. we're not trying to create a final solution it is a good taste is interesting for many reasons it lay studer greater semantic web which allows all which also gave first or which allows us to. to explore its mandate work as well so instead of trying to replicate everything into which you did it from primary sources began leverage federated queries with the ability to do that is that we have the ability to make one for every across multiple stories in my previous flight i demonstrated a federal jury between a. did you days in which the data but i have also examples and then and now i'm happy to share data were a federal career runs against another spot where he is just a case which our place and we get it as you have a with the base you have with the data and you half which all face with the polish doesn't wrong. the ecosystem yet we can use or saturday hers so on to and ways. it is famous six case the deal is there a circus show sixteen competing databases let's make it universal database that means everyone snits show research he has since seventeen compete india and their concerns saw then this is decided on going to a time when going into this is another example of federated or. the which runs against against so he has to be against media always so we ever we get a query we have to our. michael and point of which he bought race and we get information that is not in so certain like we did a drug and we created or drug played on its captured in which the data for dare metabolites and which office identifiers it's not and yet we get those results. so we have interoperability. an aunt and my talk on which acknowledging all the ones here a result we have a paper on. on this is our latest paper on the proper all project. which. can be followed on here the links these things will be books to do. the slayings really put on to which he did to report on the beach that relates are and you can explore is different a purse. i see there is a question. and questions about who is a target group of gene which you do you know our march it is use. so yes and no yes to all gene the gates year the data we can get a community. and by extension but also the research community and because it law allows the research community to leverage order. feels so even in resisting he did not have access to actually in there is a community has defended assess and there's a knowledge base where everyone uses their own schema we invent our own so to speak. loans in exile she ate meat define are always eat well as equals finance and which he did every sense a way to harmonise so models so that if we talk about genes effects sox about jena and white talks about jena can agree on using we get a model to describe your relationships. the destruction of behind data information with respect to how much how often it is years yes that's a very interesting question we get started. some preliminary a analysis does in two or three years back but air and we're looking we're still looking for new ways because their usage to destroy it is a bit the us india still bound by his songs on licence a sword is not easily accessible. i'm has to really use case virginia jest contributions to a disco free like signs like form. yeah i would said i would example but a and it's only it's an open question i was saved if there are used as trees to share a new comments but it is the example i get in my final sites we all face which is is a prime example off a research. a research and our project dead tissue that leverage is that information that leverage is with the data. yes there are used cases there is also listed in which is also leveraged into disuse ontology left richest their debts that's part of her own project and if you know for example pleased to share. the question is which the pope is linked to other parties databases and. yes they are leveraging areas databases such as i know where this is a question we need to ask the region of western media itself but i know there are leveraging. and i'm if i'm not mistaken kak is there any organisation outside with your world to use checks and you can communicate your requirements as it is a great concept with ms showcases to inspire others to have personally i got it is maybe and maybe i should tell a bit about how i got used to how i got to introduce the ship. patients this was actually a conference in two dozen sixteen and sodas checks is an interesting form of because what you were dealing with which you would with the data that we have to construct fall asians but gone straight file asians act on the on the statement left also at the time i was really interested in him and ten. when it or a mechanism that allows to do to grass analysis so not only that it's a gene but also that is aegean it has a reference to source x.y. see. so i got into adjusted to this project to in. internship expressions added conference and added tied it was fire and i can think you would lose. bear with me i am tried in the usa is fired or. if that's not the lingo for fire and at the time they're using i stated in britain he added then brick lee is. into ship expressions and a and yet we had a recession x. community group were not only use cases in which you get are being discussed is any data any shape ship expression use cases anybody should welcome to join the community group and we are which needs to do we are screwed.
from . whether you see the d.v.d. projects in five years i would actually have the most of the most. i would hope to me general. they get and that is being billed be an implicit part of all the data as so currently we rounded bots we develop a. a.b.i. language to interact with between by ten and is little we can to integrating the meeting that and that's a weak spot so i hope in five years' time. did you meet your project most away from maintaining in developing the boss and discussing the. to underline scheme us so we have still been building mostly the infrastructure but i think we can say that it's more or less mature need to be some minor given so i hope that in gene in five years' time the gene which the project is primarily. actively adding data to which the data and discussing ship expressions changing shape expressions so basically and that we don't talk about schip expressions anymore we talk about data and seem so bad as a project me real be using with the data to do to discuss data and underlined. yeah that is that said that said that's an interesting question and different life sense feels it's sometimes even not within its sometimes even within the same within the same air life science feels so even with interesting life sense feel that can be disagreement not not on the topic but on the way. the games are being described as being there is only one identifier two point two. there's only a disc set of identifiers so. it's indeed an interesting question is how to deal with the different levels of detail and precision. i think we're at the start or having this discussion are having a solution for this but my gut feeling is that it is expected to where we could base comes in so you have a high level proxy on which the data and and the moment there are differences in discussion and you need to stand up for. the boy said. a few days the only costs first test is to fit into the station we run into an interesting aspect of death in our collaboration with which he operates so would you are always has a concept of inhibits so now if you want to model that in which you do it and we need to find a label for the word in his. it's which inhibits have different meanings the in. and within the english language but that we start talking crossland which as you run into a lot of issues so at a year when we were a model in which you are placed into the dead at to be able to run saturday courage to our and point. the decision was made to leave those interactions out of which the data would only add in the identifiers sold a model of a pathway of which partners in which the data consists of name labels the citations and the individual parts but once you touch on the the interactions that it's an innovation this and. expression as cetera so you write your own into disintegration issues we leave that out of which the data and rely on in this case for which are always on which the artist itself but indy and by extension would be could also serious and that's what i've been trying to do with example are presented earlier that. we're still not days and star populating the weekly based on the show community to do we get a community where which data is their connecting heart between the different or the oscars. kaine has less to i have been hired questions before together to the next fortune and so being a admission myself what i have always farm that for like scientists say a general also paid as eventually and the good as it is quite literally. kids how do you make them have thought of a single standard as visual it comes looking learning curve when i'm still a bit wary of things like that i would actually say a not so you should not adopt to single are so i really big fan of spark. because it if so but i am and i i'm getting it was staged a time actually the size get annoyed when i heard when people say sparkles complex i agree spotless complex but not for buying from addition especially if you see that the buy in from addition uses a lot of the ice so. and if people have to use it the ice belief must be writing sparkle is a lot easier than having to deal with all the different it was out there so it's worth for buying from addition it's worth investing learning sparkle. having said that and i'm not in a position said everyone should use sparkle in the hands on my or i will show an example. so the only reason to get people on board is to show working examples because i often compared with driving everybody stands a lot of money to learn how to drive which if you look at it from a distance just a car with around three and five six and we spend a lot of money to learn how to drive because it brings. somewhere i think we need to get to the same same point that people find it worthwhile to your sparkle and understand what you did and by extension. strangely moon will export position so. first let us all creativity data a common than you can go on to go watch your muscles so this is a bit of our visit bit of on our first time for me said this is a hands on workshop and usually when you do the same act on style of a workshop you're in the same room and and sober. there with me if things go to fail palace in a chat so we can interact with the ideas. so this is a wiki site conference so are and i'm trying to get a bit let us play with getting things into which he did die and reusing it so in this specific case. what i've gone a first step is to go to would you be article i have selected the first page that game on this morning you not go to would you be or what i did an hour ago if you go to be we can actually check later just was one of articles on the main page i went to. the record says which is. which he is here. and then we have a set of us just won and this was on a swan. in and does on fire away before i continue its human everybody in this audience is familiar with go yeah it's not really say so in the chat and i will give a brief. him off though i will anyway good for shortly was he so we have to a video ice here so or starting with disney why. good as a project by. it may be a foundation so why not try to leverage all the citations that are you in wikipedia. so first i want to know it exists here is such a struggle worry. and the lengths will be put in good or bad just shortly or you can follow the slights that are each about already. but i run this property which thousand me i'm interested in an item which has a joy which is feasible when i must first on top of it and this is the voice very well which uses this value. so now i see that the wearer is that we get the item. case but. for his identity. you can see my mates that i. it's interesting i made a said this morning at a goal set by and nine twenty four another bought got in. and rich the item with with label so what i've made is an item using we get the integrated which is a fight and my reading we use and maintain the gene project. it fits the items for for this article which i had asked knowing you tube channel. this. here. this is the movie's face of all. this is the pieces by didn't go to the that iran so it's its five and go to imports get into greater logs in two years were found and than its seeds. dui. i'm saying is a dui to him. and. it listens to cross or so this is a bit of kathy at here is you know in the following minutes when we started doing this ourselves and you follow us and india why does not resolve into a.
into it is. the item. and it's because that your wife is not offered by phosphorus yet. so was she there is a question more of new display this little boy used to know below latest incident the show i yes that is saying. i only there i wasn't aware. i was aware of the disease and and. where were the ideal diet so this is a use the library that i recently saw another demonstration and i add it to it and i well after i will try to see. as i can find its use a script that you need to imply that you need to install to use the ground and then you can see you get who had you can get the site and sexy india next to the. properties and statements and labels. and why was i so. this morning i run days this script and now i can leverage is i can run his career and i get to resolve this week he did. it is this we can get items we created this week it arrives and for that item with a week eight item on on days we can then go to columbia and its kalia. and this is a singer as the eye of dollars in debt or so i'm going to get these year and we for to decrease years installation of the queue which i understand this online but you follow this address scalia will fall to or and then add the number. this is the item their home. this visit is inside the paper called protocol for our knowledge to be decked out a story or and was folly of gaza is it it leverages the it takes in the information it's a browse through key data and then present day see us or as a percentage. for now that we had this item of this i can forget i can for this paper is that beat its it's not a cent at best and at i'm going street stop here because i know i really thank my goodness for. living in the link to get the user information do you get out much. and then going back and so we have this what has and i don't want to get out which is expected to say as that is being i am. presented to us by for stress. and so now we want to add to the interesting blog who did it is not to replicate as has stalled in my or my daughter to replicate what is inaugurated bases with to link get and to enrich years old it already actually happened by someone adding the dutch dutch label to it but. we can also which is interesting start annotating what his paper is about and we can do so by. by adding a statement. and we can call it in the main so get so it came from its games from all. city or so is this we could be argued go so does the p.d. out the girl has by the side and we could i've been on his own so we can link this item on the paper to him. today's i too have two key data about his art bowl. you can see is false india cyrus this is in the article and we already have on her information that we've got to get me in the arctic or on this week that i can we have sex and may we have an age sex and the rhine aren't that song and dine on one's got the glory. and a set of identifiers so the main topic of that paper is. an item. so we can now add it. and publish it. and we have. yes and which is the key data. in which as we get the item and we have police these are to bill gates up with the p.d. article and the concept of secure sours so now as we go to skoda. and and will see that works he says all of his life so if it doesn't work don't don't shoot me. in seoul. there are links have to pay for a date and propagate yet. bought me adding the this is something we need to ask the scaly out these are of course me adding the main subject here should act have actually made this state are here so or. being where are we here. so we switch we what if we don't we have started their we want to read this we could be article than check whether that's just that. and. i then i'd and years the bought to do that so i explained that in its fargo was needed and already i s s m r m it was made its far can be intimidating my clients especially and it takes it as a learning off so instead of. having pushing. a sparkle true you can also use them you can also use. ass and this is such an that i've made year the dui see if it works. i have made their little at. that is available online that has sparked on their knees and on. it's a bit to do more when there is anyone has a better way of this rendering the skunk me i would really like and girls that's what i can now do is and isn't going to be a bit tricky because the example that i have the years has a in the media so i need to copy the exact same access. dui as it is being there. be stored so i see results so it's a really here i can log in. and yes i do with the data. case something is going on i will i will see what's going on here but what i what i hope was hoping to have and his dad would have to scroll you and we get the age to go back to do that later and so moving forward with these remember when we continue in. in minutes. go back to his website. indeed you i get a repeated item and stock and witching it with names such as said. so i'm moving forward. and so we've gone the abdication of the main subject and we go into the next that so we have here this article the body also add it and. order name strings. the air and in which he did that there are two to two concepts regarding auteurs we have the option means training but we also have the altar. and so we can get the item and the return at the end result thing alternate strains to do with good the items are really hard problem. you basically cannot do that. or not you can't do that automatically also proved to have a focal so in which he did at of which side community came up with the concept of the art and names training and their and any art of property both properties are to get chewed eventually we don't we want to know more about the auteurs not only get there. daughter in a string is the author office of paper acts but also ordered paper so we need we need to be good idea to nose during a body or so what we can do is having this created use any years any online to old made by one of the which the data also repeated a community years. images which is one of the reason i like with the data and people just make tools to work. an hour. it is searching all the name strengths in which the data. and yes all the and then strings where you can check if just if there is all a church is indeed three lanes to these papers and here i'm going to stop doing so because i don't know how of church and i'm not for. failure which with the really odd papers but if you're no one of the auteurs us user can go to the stage and said and select all the papers that aligned.
with the item soul just also broke you can do it for your own bed or she can do it for. he was in the group or your co-workers of collaborators and once you have don you can create said this is a british colony on the list which he seems to be true as you selected and then. a person has an archetype even the and if you do it. all the name strings of the otter names change known be moved away from the auction and strains and puts the otter to work. when and than what we have already date if we were once we have strong that information we can go to slowly are always the data. but that going out. let's try and win it. it's. nearly half the item. so we have an attorney os that race like the publisher area has a list of our terse it has a box force which is only main subject is secure south korea so so so if we add more topics main subjects who would just this looks that i think the timeline doesn't have enough information. so are still a lot of data amazing for this shows that which is nice but scalia you can now get a or and and rich missing and with rudeness and. a grind of patients could render and two years. that's that's more or less from arm. my or or are. so i would really like to invite you to go with us so i'm looking as having them how much we think we have still fifteen units right now. so yes a few minutes so. it's even so it's now everyone was listening to us it's your fault was due to begin to one black fifty we can maybe i should do that. that means the. so i'm going back to easy to get your parents and you can follow maybe we should have collectively iowa as one was listening tried to take this paper or as far as you like to take any paper any wikipedia article or any ordered your eye and then we tried to. two. you try to resolve add to the ends of nation in the date that and winked at to be a. for example let's go away. didn't the second one for sarah is check if it's in. it gives him a few key date can do this and why. it's so. go to that we keep records and proceedings. the scientific are good for all his obligation to eighty eighty seven it came from a c.p.r. to go and. which was his idea and we can now. at main subject. i'm going to do that but also stop of the year. and this might need to ration attention as well because i am making is testament to the main subject is eight years our discuss league as it came from the spooky the article i want to link. labour could easily keep the article so by adding main subject suitors hours and publishing i made his assessment based on wikipedia page but it might not be the main subject it might be an order of my biggest side note or the. so it is up for debate and discussion that. that we now have with but but doing this we now have created a link that can be discussed between main stuck between this week the article and its article so go to do next he he. i'm trying to find one that does not exist yet. additional that's trying. in. indeed you more. so little harrow added i demonstrated she do this that i needed to be bitten see why it's not responding we have it here as well go to do we get out and. and where is it we're year. go here on all jews kind of the ngo two main subject. the main subject. circling you which is being the main item that he spends with the periodical and paper that being cited in there will be our. i am going to boss or maybe five minutes and. and as see. to see us actually thought that bothers him. there are big items from this week he the article which is and i will put it in the chat. no i'll put it in the region. but out. own. exxon golden. so let's try to be at the end of this session house all the papers in the references or in their more. sue or. it's any major do. and or if someone else s. know i have to defend your eye that i would really like to to go through just posted your eye in the chair and i will go through the cycle as we are. players don't forget the g.d.r. to come there is a question i was thinking of structure. a drone to understand the question and soul. the main that. you want to have to reference s s n as it is with structure commons where the article lot of commons the broader day images some commons are being. as structured information that can be created sparkle. ok i wore to argue that that's exactly what we can get eyes. so that we would need to agree on so that way. ok it doesn't lincoln post links. future doesn't like the postings ok you can if you get a geo eye it's about a dui you compose eighty hour without stage city section so leave everything out of so here the machine if i can get to a dui so here we have to so. you can boast it like this so everything if i go to let me see if i can get delaying the link address. hong kong. noah was cool it's so if you read most the sport of the h.d.t.v. and balls on india why ice a start i can check. the real. i guess is also on. aid will be. i know ok i sorry i did back in the east and without the h.d.-d.v.d. why xo i think indeed. did this is indeed. that is he is indeed a gucci group would be shared you i say or aggressive yes said a reference to scan the current using sparkle. an interesting story eyes didn't see the questions on the its references can be covered using struggle this can be next way to and which we can get info yes there were maybe i should spend some time on their own straying that because it touches on a duplicate whales modeling of we get the item so let's let's let's go there to curry.
you get a bite and and i will take the uk to item needs to be. so yes this one so let us stay this one. and then go into this. the man. why we have asked we have the items here. but what we want to know we want to get to the raf census and represents the stakes it takes a bit of ion takes a bit of us understand knowing of the structure which has been hidden that if you go to africa and you write the seller is its and down. he said there is a and when you say. and i write. the. the very on moments failed source of pride. and i be on call meetings. so how for only six. i have decided a champagne on ice a while. c n n do you check if i feel so sad. so he said asian and died i came our rights are a clone dismayed when they're worried you know i'm adding this wall label service huge now allows me to not having to leverage. still the only label all. leno own right. mabel r.i. wrong this idea is our goal is for the arts now i want to know all rights these icons because i'm using what's called a short note asian of the property which is a w d t but with the data also has a the property. which allows us to his career he the addition all properties additional qualifiers and references that are and updated with that are captured in we create a show when i changed his w e g. into the i mean when i need to know i'm calling it a note the controllers know whatever its this points to a gift from your gut will be extended into order on so now i can say no i can still get the shell you i see your street will be won and i can call it. so now if i run this jury i will get the same results. i was a scholarly articles but it's a bit different. i can now used in notes to get to the references so if an arse a note profit last year i from are called is a reference says. and i dance a rare for reference service with me and go so i had here i want to have visitation has an engine self i'm expecting it to be have died and i want to know if to start his reference so when i now run this. now and then i should of course should put in to the family olds that i have every year and i will get the reference as stated in date at cetera so i now have does and i can use the piano and if i now go back to the initial paper and. an easy chair twenty five which one of the big. this one so we can say that either off for references retrieves reference your all the oil unstated game again go to the results i have. after all those references here. so this is a very quick and dirty way of using sparkle. the average french. the references and i am rely a lot on ageing and one i want to distinguish between. between statements that's half references and hassle and may be in use at five to more to do get to be a bit down to the verse what i don't hear as i had asked in main subject. but i didn't add a reference so usually i don't take statements without these references. reference a serious the girls. thousand. we want to put things i have no way of sarah fighting best that this paper is indeed about. sars our war but what i can do is add an hour and a reference and says. they did in. when. fish. korea. energy degree on our. so you want her to try again up one million and i had a resonance and so you're saying this article or he can then distinguish between different statements in which the data based on the references and and as i sat is that's why reference to us into any which they just didn't you cannot put any. enough says references to be cheated. even even if it's for identifier so for example a mess. year even for reference that there might be redundant see here. the idea why is your and and india's reference to instead of the joys is so yes we could argue that we can remove days and yet have crossed raf. so we don't need. don't needed but now we know that this d.i.y. about his paper came from process and not from the original source sometimes it's coming from the original source so even with identifiers it's a really important to put references in doing so users can verify what information comes from.
and need to warm. i'm not aware of take to duplicate reference to catch it. and. i will look into the art and can you know put you because you need to care. which votes. if i'm asked. and. i can i will put day sparkle query india either. for any difference for home. the. the. so where we can. see and see if there is a is the. does anyone had the lawyer. of paper of your own that we can and link to a topic. so why are searching for your own d.o.a. i'll pick and order and order. dui from these lessons or maybe just always. for four days although we would be nice if we can have the keys all the wars in this paper in their let's go and so will i do because firstly this morning were see the the three can find something or yes australia i'm a big fan of four for us so let's. go to the australian with them. see his we have some papers there. there is a question any weaknesses with joy and lily i guess you can say everything has a weakness but a daughter is a really interesting concept because its results and soya it allows changes. it's more system stand for example your also the original position because publishers sometimes change your our change the dresses. i noted there are gone for checks that used to arrive for data set anything to get a site is one of those initiatives early yes i would like to see that. and. there are two sides to this question say yes you can use to deride to see where they just said is used. about eight years ago a star i explored years we have written protocol cited in were recollected citations to databases and modernist none more not a better than then you can actually used to identify relevant data sets and so yes i was really say let's use which he did and now two point two data sets. using a dui having said that the current. were flaws that i have shown in the abscess have been presented and also in the week he did to integrate or rely on cross fresh and s. and not all of your eyes are currently being called for by cross traffic so for this to work we need in order is all for the points that resulted dui footed assess where he has a day. here i say let's go. you are in his own lives. kaine can i copied is. can someone put that in each or bad because i cannot copy from the screen. so maybe less let's try to target its terror fantastic. in. q let's go to do. to spark all added there let's see a case it's not in there. do let's see why now let's just less your live for life on the wild side so i'm going to add it here. k.. i am round here on a roundabout. keynes's doesn't who were no more own so in his ear cross try things out of the air or that's year in each of the start. or it is not offered by it.
mining process a p i.
the. ok. now so it's not a new oil this is not actually it is unwise we still have the last time so i want to propose to use this to grow through new man you all to the manual process and we can do this together bars parents to show how boss and eight. rappers around ball scan level and so what i'm not going to do isn't going to.
the g eight era when the formal process.
using any box i'm going to create a new item. when i am taking one arctic ball for inspiration which is this one.
when you move indus. here and now only have this film is so we'll go. going to sue the same. i don't create the item. and say it is a stroller the park. now i'm korea iran i asked the empty in so we now have on going to put his in each of us for orders. it has many more hours and will see the icy are so old man u.. my own only. which. warm. so yes it is no one said beijing that the set and so yes that would be good. we can actually done if we have a rapper but i don't think we have enough time i can to remake a box and to work for to work. in twenty minutes but if there is a rapper or community bills or wrap around the open citation data set with the data integrated can be easily adapt to do. you to do. leverage the open society she said as well so now let's go back where rui year so we had nothing so now i'm going to copy december. they is an instance instance instance of age. all early article. and now i don't have a reference i have only actually the actual reference which is just so i'd in two different things one of the listeners as an endangered he said it's an open citation data said. if we have terrified is indeed in august that originate us that we can say it is stated in the stated in the win. attention. corps which of course or isn't good several not going to do the air because i haven't looked at it but this is a way to do that says we don't have to bear the only thing we can do for now is at references and said the reference. the reference you're all and i adding this so i am stating that it is a scholarly article based on his you're out. and and also at your eye since you i was used to identify the year. again the fire and i lost it again. identified the swan. the two.
and so i have had so i have my own statement. so there are and why is wrong with this. it says he is not a correct. i'm probably made him say. yes i forgot the main on worse too. in here. a it changing gears so now i have captured a good is that this is a good idea and forage cover the article and we can use. we can use. we can start and which changes and and since there are other suggestions in the chat i wanna table this for now but i can fight the audience to and which i will go to school. it was his sights and two. to the gate our own. to you. it's four hour or so and then we go back and check for our war office is the. when i saw there were some yes scan. won some such when someone that. the aces this one. and yes that was his own. it is being seen medicines or we can.
i think it's so we can go back to the. despite the fact that been seen it will be in. the crossfire so i'm going to change the do i. grown too. right. moron. but a bit but process to an the data and the good and the greater boston was their magic. so while that is happening i'm going to use the ideal time to go back a bit soon yes but they know we have it now so that the oil a sexist or i was too was i. and immediately to bought making to bore. bought added indeed what i should have gone is as she cares. india's he added to this property which i will share in either bad as well check it. he says he doesn't know why do i get. it is so annoying to check its says in the us and. and so no i share and. usually you have good your needs and eight foreign security. and. checking so the paper is already in for a dui in which the data it now i don't on this and why it is not. it is why it's not true soul thing. iowa it is a sensitive. seeing that words yes now we have the origin. so again shows a bit the king of their might need it so here we have to specific item. and let's see your soul. so now we can do to march on sleeve. have to win this one. i will go live too. this is one of the accursed that will still only or as often a string. ok. a gaze and i would have us what was the and. it was met its use in south asia analysis of tuberculosis tb while urging. yes so we go days. i'm not going to things i don't know the auto northern neighbor i only know because i've come from the with their i'm going to lead the rest out. and then say it is so you couldn't do it. and now the and this will take a while we might want to need to check later because this can be cured this order will now be a saleable in the auto link and it is possible to to browse can browse through scolari a. on. ok it's all its low. so while it is searching i'm going back to one statement by hosting in turkey it's about said it is an open citation corporate so i'm going to make a claim about and so we have we have said this is.
nowhere was it. when was this one i saying. in scholarly articles so we've already laid his restrooms bought it is apparently also available in over a citation for its i'm not going to check that now so we might want to delete verify ousted the workshop and and the leader of sense but i'm trusting the audience here. i can make a second reference so i'm saying is that is the reference is the euro and that's what i can also say its stated air and then use the open such patient. and so issue and. or worse. and that you need to add or identifiers which i will evoke an hour for his for others to do this is a collaborative i can for others to enrich so now. publish it and once we have started i'm going by two. going back to. we're here yes i want to have just made. when. where is or yes this one so we want to browse in slowly we want to grow as this article. and you to check who dared to model and chair can more. he is. thing is still mention those on results. yes let me use this alter s. tool that i've just dumb demonstrated. you might have to wait a bit because sometimes the items are being parts for process and so it's not actually put into be considered will happen is what might you might need to check with your but in the end if we have that. once the person made some string was saying my time. we can also use coli actually to browse through the civic are so you have a list of obligations for the quarter of that they are we have number of publications for year number of pages to know why we're rousing this solely as its uses problem worries to run or two around. all these fish ice agents for this for his art either is even associated interests. ok august requests so see the rest falling around. yes i will look at that of the latest h to see if we can accept and with it is also creating over said asian core is linked to use to to be used by would get into greater is or is a great topic for had put on as well. neville the creator of francis or yes ted would be will be. although i want to hold back there have been so in the pipeline that i have demonstrated so far i'm using the we get into greater and this allows this allows. large. sales of data and so if let's let's let's assume that failed at the open said is let's say the open said asian court was materialises what we don't want to do is half the open citation corpus. just for being replicated in weekly data so yes i really welcome the enabling have to cut references in your midst of gadgets i'm going to look into a bill that also would like to encourage you to be to get to be to be a bit slow one that not not trying to do get troy over the fans into we can do to so we can. we used to what would be also an interesting acted on topic or community project is to see if we can load open citation corpus into we could raise the standard we would be able to leverage your consideration crawford which federated which you get with the data courage which opens a new as a section of. of possibilities. so do we have them as and i think it is casual had some discussions and round up right or. this is the ruling need help some will tend to have questions so. this vision your views on the whole thing on we can carry on. so while it still no and so while we're i'm waiting for questions i am going to continue on he says. now we were he started with the raven where was my refund. the earth so lattes again saw that a reference so form which he had his the genus core players were going to see if his duty to pipelines i'm going to continue until there is a question and or we're out run out. this time so i'm taking this item. it's not in there. we did dot snow. it is there so now we can go to get items for that reason is a scholarly article. not such a good neighbor because it lacks and not such good we get i can because it lacks a lot of references. last year's for all. we can actually and rich years by saying this data in. ross press. well i need for a fight it so let this. check that. world. the s. it easy for a dui. now i have and four and five in crossfire school where it's to the. the fox old. and when you are. the movie got. on one attacks. so if one said sex out. i can say i don't for a foreign war we will do a dance. one. all small gave in. nine and one. this one student told glor. one moment. the air. and while the end. whom he is. also often school and soon. its own to warm. one and will soon. all this one. and when. warming will be. the. working to pay each. what do i. now i want our wallets said that it is stated to in whatever assistance as as more way of small me this is an act that would be why so i moved to sarah sarles opens a new term yes it had a busy german number and since its use in the process. russell hated the art and safe to say that is to stay to in spain. and prosperous. wasa us or and that i'd check good. way which is global. and. and good. and i have made it lessens the somali has. it's an orphan i term because it has all the information about this form of the article that can be found in any order sedation database or s. and we the site in this is sort of boring item so on our we need to do is sought enriching it and make the main subject is named subject. and then we inform. more on our most you just one. australian raids and so we go to the gate item. the good fight them. she's just won the into two. yet. office and then we get actually adverts and stay within. the english league we are. it's always intrigued. and the war. and yet. and one. he also works using on its think this and when you've got some news and world in. and that's marked in its. in one day of its. i know we can ease and enriching the sole growth once you're well although it is a bit me bowman were pointing really pointing in the main subject but we can make its place it will go in all who want to get the item you can go back and stay busy the reference your aisle. but this is a lost want to live everything i do here is up for discussion and scrutiny and i am as it's been so now we have they have linked. where is the main so. we have links to do. but are already on other means subjects about courses and australia but again no reference and so i have no idea is correct if are amusing boss i have to as you. that is correct and here i have the artist. ok so i think five minutes less or at there are questions. sue searching and there is a question how can we add related data set to occur within reach the data like the data set to did you create your description on. when can we and. the news it is said to be yes that's a good question i actually it's not that if a girl to well i don't have an example year so what you could do is. used to make recreate an item for a data set so i have an example here are more want to sound pattern we use in jena key in the past is poised to a specific conditions so i need to check i think i have removed and work let's even still seen on. colleague. yes so here this is to this is this is warm this is the disease ontology from two thousand and fifteen for our sick so you can create we get the item for the data set. and saying this is a for the dance aid is an instance off a biology a biological data set of all what it's a database or biological data or purpose or anything of it then create the main subject dare say which is in addition publication is a good all the minded about data set and and site that we get the item in your week. did i gem. where you want to cite specific differences. how reliable is a crowd sourcing when it is a critical area like the life sciences i would say it's very reliable as long as day proof arch references so indeed if we have seen here are always free of seeing this. where is the and so the main point about you be using off data sets air and especially the new data sets on which he did that is that there should be the means to to show our data is coming from so yes the. so yes you can actually. efforts to data and then used boss or currys like we've shown before to say i don't want everything from which he did or i warned only that section of the good that follows to follow instead of references. seoul short answer is i think it's fair reliable and it's already helpful. and crowdsourcing had it also showed a process you help to to do and richard gere two. very interesting use cases of which might make the site is one of only one project. only we need to bruges on more references so we're able to fire a fire what has been added to the data. can we use the oil form the decider instead of creating a new data. i think my short answer is i don't know the and so creating a new i pod and i don't know if there is already have bought or a form that dust that but it's it's certainly durables all the moment someone creates a similar has an a.p.i.. and you can join under which the integrator on guitar and suggest i think there is still recently has been a specific preconcert have been added to get integrated to do you stand so if there is a sense and although a.p.i. already decided. but it's certainly possible that currently it has not been implemented yet. he says. just. i think the the you know sessions right now but andrew you can still continue. how much more time do i have. stand on the moment is ok now ok i will leave this for he added i just wanted to use the opportunity to ask for thais at a workshop at where are we are getting tomorrow which is said about immigration online workshop and their registration is still open and dare we will die soon link. in diseases and symptoms. o'donnell build a lot of redundancy of today about you feel interested you join us there and we have four more made it so let me check the each or bad if there are suggestions. otherwise i take another. i take another article from her. here the australian race and so we've taken over here i so. it is the opportunity of which side is also about adding the periodicals to meet the data so please join me in following this five line just think of the oil and loan to pay a swan. then we can go to legal sparkle are we. having one. he checked his new data it is not in that gays and adding a tumor wonder what will she be more. it is only half that so we can now. go to mean subject again not have a lot of our census so when stocks it seemed years by saying stay the i mean. as for us. wait yes he was a girl not me i needed for five days as well as all and go in there are different ways of for foreign with them do you see are now. to him. dji and the week at eighty two at the back is covered in cross that store than that. while that is searching on warming but in these and main topic. already there are no it's not. on mainstream while we have often instance in can do mean more into it. manson and more and again we have to lean. the australian raise an. and good to be treated or at home. chain to use. warning. why main subject. wilson's is still huge mean. yeah. more than all the trees. mobile. in the hallway. and for the welsh then you can join. in short we got it so we can say is stable in crossfire. again sarfaraz. retrieve mean. which means. warned. we're always on call the. we had a daughter here as a name saying mean a higher only. longer too. i wrote me. and no quarter. in war which we have to. he is and the nation of predation by grows on your own well. you can check its tells you mean this. i get i estimate checks are a fight is that i did here so i can say yes that is the case. iran was annoyed and so we can i'm not going to get someone falls to in the project but if i would have known the market id also i wrote i wouldn't put it there do it then not only world need autor i can be created with the auto i can also be linked to specific pay again i'm not doing this. my would cause and more and more firmly with the project or i need more time moments to make gets calling do the masses use these tools are here to help you how on to do that so we don't have to write all the items of our results. i think i want to leave said ed dead on list there are other questions. is there a person a special he had are as a given year error there aren't any questions says no but i do want was using visitors might don't want all about go and sure i know i have heard of barrels of oil being bad decision but i can. the story have was i was can you repeat a question you know i'm just i'm just saying no a whole thing would be detained by the engine i was saying they do you have any collaboration is a far companies oppose it because of the year treasuries all eternity. the . and there's a lot of historical will do so. is there any contact with them. sort out their front are different context with an air is different context with was foremost because there is also a key project pharmaceuticals are in a previous life one of my slides a show this chemical chemical knowlton knowledge trough that was actually leverage from and different from unity. in which the data dad close to taking care of that so so yes there is i assumed our contacts with the pharmaceuticals very sad and manage he's out there but there is another concept that it's worth mentioning year is that with good is about public data so on and it's also. and sometimes also not possible to enrich all the data sense whether it's from farm our culture institutions because there are proprietary licensed on top of that which the us people are talking around are working on with the data from very many years now places. as great an earlier era are at the gate urge the lead you in was in my in israel will be a computer scientist granted there are very few of us will have to put it early last a lawyer and war. in the project so how do you not plan on increasing the individual. two. who are will be the real consumers or project in the. when you talk about redknapp scientist. what would you consider about life scientists people who are doing the experiments and the because i know what i would as you like you can be a creature's all. paulson is designing like that. because of a single spot a great mind actually you do. there is only when she says. maybe all express an experiment or which routines might be transparent center or those kind of things to be sooner or later one color was unjust people like. sorry asked a barrister to do things the order gene which is not a resource is a research project that recognizes we could ask a recent research data in knowledge infrastructure. by to use that infrastructure which is nonsense kindly profile media foundation we develop boss and use research data saw as a project i would set a project is more in use more aimed at the gears and by and missions right monsoon use the boss and we need model etc. having said that having said that. the question should not have he should. i have nothing to question should be difference huge market biologist or are what led scientists use the data i yes i think so at and what that so that's more injured as board about using wiki daytime and the question is are due at life scientists are used to india but i cannot answer. if that is happening because one of the toughest thing on which the data is we do we actually don't know who uses which the data which is a problem because we're in our in our game in our process off trying to get more live science data on the data a lot of data sets couldn't go to eat it or because the data is not available with a great license and. a lot to offer a lot off. researchers don't want to release the data asked obligated because the recognition for is needed to show that a date has been used so yes trying to find out who is using which data is a big problem or as is his is not reason is a challenge and hand prefer and so can always. in the sos if we have different ways off shore we who is using the data now a one way of doing so is using references so if you i mean there is there is a licence is one thing this is the legal framework so i were you see sarah data to its common add to it in him to interpret other the. we cannot use the. instead we cannot we don't need to reference site where it's coming from i would argue that's the opposite so by being fed by showing that for example you use to some data and research a release date as you know you can cite the online paper or you can love the site the data and by using citations to data. and literature we get a better tools as showing that we get to make sense but now your guess is as good as mine well or how many i know of some people who are in a wetland who use with the data but that's just incidental data i do we need more that are ways of showing. orders from we cater to resources so. people got engaged more great year. couric. thank you thank the interim and if we have. don't have any all lessons i think we can cool session. using them in central park like the opportunity and plays reach out to us. on to tear on get up. so let's let's have found on which the data and i'm just said. the so thank you thank you so much more. this year. by.