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Adding Phylogenies to QGIS and Lifemapper for Evolutionary Studies of Species Diversity

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Titel Adding Phylogenies to QGIS and Lifemapper for Evolutionary Studies of Species Diversity
Serientitel FOSS4G 2014 Portland
Autor Cavner, Jeffery
Lizenz CC-Namensnennung - keine kommerzielle Nutzung - keine Bearbeitung 3.0 Unported:
Sie dürfen das Werk bzw. den Inhalt in unveränderter Form zu jedem legalen und nicht-kommerziellen Zweck nutzen, vervielfältigen, verbreiten und öffentlich zugänglich machen, sofern Sie den Namen des Autors/Rechteinhabers in der von ihm festgelegten Weise nennen.
DOI 10.5446/31684
Herausgeber FOSS4G
Open Source Geospatial Foundation (OSGeo)
Erscheinungsjahr 2014
Sprache Englisch
Produzent Foss4G
Open Source Geospatial Foundation (OSGeo)
Produktionsjahr 2014
Produktionsort Portland, Oregon, United States of America

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Fachgebiet Informatik
Abstract Phylogenetic data from the "Tree of Life" have explicit spatial and temporal components when paired with species distribution and ecological data for testing contributions to biological community assembly at different geographic scales of species interaction. Important questions in biology about the degree of niche suitability and whether the history of a community's assembly for an area can affect whether the species in a community are more or less phylogenetically related can be answered using several different spatially-filtered measures of phylogenetic diversity. Phylogenetic analyses which support the description of ecological processes are usually achieved in a handful of software libraries that are narrowly focused on a single set of tasks. Very few applications scale to large datasets and most do not have an explicit spatial component without relying on external visualization packages. This prompted us to explore bringing phylogenetic data into an open-source GIS environment. The Lifemapper Macroecology/Range & Diversity QGIS plug-in is a custom plug-in which we use to calculate and map biodiversity indices that describe range-diversity relationships derived from large multi-species datasets. We describe extensions to that plug-in which expand the Lifemapper set of ecological tools to link phylogenies to spatially-derived 'diversity field' statistics that describe the phylogenetic composition of natural communities.
Schlagwörter QGIS
Biodiversity
Phylogeography
Biogeography
Parallel Computing
WPS

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