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Implementation of TaxPub, an NLM DTD Extension for Domain-specific Markup in Taxonomy, from the Experience of a Biodiversity Publisher

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morning all right on so I am here to talk about the implementation of the text of which is an extension
to be an island eating jets from that that mean a team but people developed a few years ago on and like to point out that the result was obvious from this presentation in the paper is the product of of several on minds distributed across the world the no the Commission differ domains as well as some a library in you is a few scientists and Pavel this origin the world work for and of to the publisher like this so distribution of talent and work will be evident in the rather rocky nature of the presentation
which field on colleges for advanced your and so yeah we're going out of focus on all what what we've done later what really the have has done with of the textbook extension for the past several years on but the focus will be on what we're calling semantic tagging and other enhancements in other words bringing out the harm the items of interest inside of votes on the side of plugins take in this case of taxonomic literature and then once having done that from the dissemination of this
data from the literature to various external aggregators and mobile talk briefly about some of what it wanted to the text of the future 2 cases start off from the
distant background and cause a positive and we're organization of a doughnut gusty and I and doughnuts scientists and myrmecologist studies answers taxonomists so we met on project an NSF funded project the future of project and didn't and we didn't stop work on live we found the the the word very interesting so we found the company work organizations that so and on we have members of Switzerland of Germany and the US and the other was a member of a lot worse is here in the audience and words were redundant happens to live right now but the we are are like this term of research based think tank the 1st term is done I came up with the kind except that I the or you could think of a sort of as a and then the scientific label such comfort male very DIY approach to to doing our work I immediately we don't really have a mission to provide a focused access and that is that is the nature of the major goal of we do this is true for different areas so we have a lawyer on on on board who advocates of model used the way lawyers can about open access on line you know if you people won't work on technical solutions such as text on we maintain will be collocated repository which is basically a on the platonic repository where the treatments which of these 5 later our deposited in this and that can be accessed directly inside cited on using stable URLs and of course the format the seafood analysis recently we found it so we found a day of GmbH uh in Switzerland and that which my understanding is something like a limited liability company so it's a commercial entity on States moments as a player on what was in the organization of the Orion association so to perform actual commercial services such as Latin conversion and in consultation so we received funding from public donations private donors arm and recently we've been involved into the European Union grants of them just the funded tender yes we have points the world right so the context for
this work on is a is 3 or 4 people 1st is on the global level biodiversity crisis that we are in the midst of from 1 the greatest die-offs in history on the and of it's it it certainly is a crisis has been well known of about 20 years at least and but this the very very few systems and and tools to all measuring document on what is going on and this is a scientific and aspect to this on that there would we estimate that is about 100 million species that have been described on that we know about and it's estimated that something like 80 million more that we don't know from donor about the that have described and may in fact be dying on were becoming extinct on as we speak and the identification of the species takes place in scientific publications on the name of the species is governed by codes and sure many of you know this already being used by seizing an international physiological nomenclature ICT and genetic of biological nomenclature these codes require publication of descriptions of species in the actually capital very recent paper pop-up paper publications just very recently I think I see B biological literature has a about of publishing an arm of the charter documents from unfortunately this they specifically said PDF which which is unfortunate and that that that specific problem but it is a major leap forward to actually separate from publications but in this water that is always a lot of activity in the 17 thousand species that every year new species instead of the year and on about 100 thousand of the descriptions of existing species so the tremendous amount content on locked up in the literature and coming out of an increasing rate of the and however that challenges in this fragmented of about 1 of the taxonomic journals find books on so it's difficult to access so on that open access is really the key until an open-access in both in both as the term you need to have an open free access to this literature and you need in the in the content itself needs to be open in the sense of being able to be accessible directly so you can make on take great advantage of the rich content that is in there I and in CS if you think this is the solution we hope is open access and both census medical has publications from which what are the gold standard that starts slide mentioning here is that we really want of the fuel account publication accelerate the publication process so that we get this that descriptions you do not take that long to get out in the data from the descriptions don't take that won't to get out in that the names are registered in the new names new names of of species are registered on and yeah and in these developing and registries quickly and we hope the text has helped in of and I got greasing
that's what sudden their choice OK so
background textbook on text that is the most very small extension to the sample publishing TTT I was just mentioned in the presentation on this and paper available on describing it online this URL on the the focus of text of this on on treatments what other would talking about this famous sir think them as some species descriptions the these are very formal of descriptions of love and then winning organism or renamed organisms so they other treatments are again highly formal the identified and they often they often are separated often the publication of experience their so there there are it kind of independent entities stands and um in and have a very high important part the nomenclature process because you have to point to previous treatments if you're remaining species I hope of getting this right but think there's a interlocking on the know set of references between treatments on June the naming processes so they're they're very very significant on document objects on other legal point that that we've tried to go out and the women make is that treatments from being statements of fact and not creative works at least in the Swiss intellectual property regime do not qualify for copyright so that we're trying to advanced the idea that publishers and should acknowledged that the EPA treatments should should be allowed to be free of copyright rest the article find but but am the the treatment itself it is of such a nature that it's not copyright law and I'm not going to argue this point I'm not a lawyer nor do I wanna be and any life on but that isn't let's monolayer but about the that that his intention of loss and in believing that we've we've we've had traction from publishers on on this the they accept that the idea of letting treatments on the on the side of belong so the treatment sample of contain basically to 2 parts 1 is the number of later section which isn't the heading think of as a heading and says but the name species is and its status of fuel and who who's the what the author of the tax on things like that and then the various treatment sections we don't even bother to name what they are we conduct the type attributes to do that the and then there's some domain-specific got elements we we added 4 in line content taxon names great known for that material citation which basically references to specimens because references to attending any sort of material that is used to describe common species and then the weakest component of textile currently this element of descriptive statement which is an attempt to somehow on mark up the phrases that are used to describe the anatomy a half of morphological features of attacks the it the to what
the reader a case so here's a example of this but if this sum that
mark the treatment of very simple you have you're outta treatment what's elements
on the other required you only required on there's a nomenclature element the nomenclature element contains a name the name contains the main
part which is the genus name messages by the cilia will leave and then the name the species this out see so this is a parasitic wasp but we um then there is an identifier and this is a z banking too fire for this 1 for this species and on another there's another identifier which comes from different system and this the tax on flawed in other words the people who were responsible for the naming of the species In the status of species no work new species such as problems so and so Satan scene in the way of what that's the strategy here that he was put in put in some the the someone elements to bring out the important taxonomic features but also using when whenever necessary on generic and a lot more jackstones acoptic tidy to what do the rest the and there's still this is an example of a section of the treatment this is the a section discusses the materials of specimens that were used to name the species so we have an element called material citation and ones together on the delineates 1 particular specimen from In this case and this marked up fairly grand weight to to to point out on different ASR facets of that citation that that this is a hollow Type that location is this thing sort museum in inside Rabia arm and and but there's a collecting events which is where where that this this past them was actually collected from and it was collected in Saudi Arabia funds to the provinces etc. and then again using a generic and alone element in content rather than put in all of all of this so while this honest for things like latitude longitude altitude all this we we Due to revise our users to just use existing vocabularies to provide semantics common username name content element to to to to to the actual structure of mediation so here is a perfectly adequate and turned up top horrible caballerías wordnets that conservative spot semantics work about the allotted multitude of the sample where this sessions collect yeah so
text but I don't really have much else to say about what's change 2010 on like a tape that but not don't take that as example of for laziness but that the progresses successes and fellow stables worked in its from its it here in this not we haven't received much demand more primary user from PenSoft to change much 1 of the things that we did have to do was on introduce the notorious acts element I no matter all you're familiar with X X is on the phone the elements and it is a lot we will but it's there to tag anything knows interstitial stuff that doesn't really but I have used what I would like that I like to think should really be there but is coming and end up in the publishers don't want take out and so I can see that this the thing the they wanna put a semicolon between 2 of the text and status in the you know and the tax tax authorities so hi but putting like that x to be 0 content model when the it's 1 the but this so that they have over the signals of the of the translation that I also have what 2 away text that is really designed with an eye toward the 2 2 new literature on model article was that this is a kind strategic up to for goal to shift the young work on markup of taxonomic literature from retrospective market to press that marker because we have this 8 million other species that have not yet to be described on setting out there and we have 1 point in there have been so this problem about we'd like to be a focus on the eve million that are going to be described and also hope hopefully describe analyze structure in granular and all that will open up the data to re-use such however there is a persistent urge and and and to mark up the legacy literature and a surprising amount of money of the test the height that urged to to do it and so how this enables me to use this term unification of the 2 thousand years of and because it's when arrogant chance and so 1 of the things that we're probably to do a text that they should say probably the physical is to have make an extension not just the UTD people to read it on so that we can address the legacy cultures wall there there is princess Martin of existing Florence on and we would we definitely set up from morning to addresses some processor publications on we have what is a bit interesting from other journals on 2 jobs textbook on European Journal taxonomy of just last week resigned very modest contract positive with them to consult on seeing how they get their workflow to all the based on text I was see how that goes optimistic and then the journals the taxes is 1 of the major of taxonomic journals in the world from the Encyclopedia of Life of just modernization attempting to create basically a web page every species on earth it is anywhere on the and the that that I'll think they limit themselves of the Earth 1 Annals of their their their offering us from they contract to help the taxes also you adopt the text of
and into the work well and so that they can stand them in their desires so that they can get the data that's trouble locked up in yes that's which was in talks produces on trip to pull out of the data and put it into the species status and some of you and then another Mary major area is some development is that the enhancement of the of this the description of the morphological features of the organisms the existing our model we have is really
just a that 1st attempt isn't that on that a successful no 1 uses it so enzymes so there was a proposal on 2 address that
we will show this on the 1st animal planet to those of you 1 familiar with this two-step a descriptive data descriptive language on this is some nasty stuff to mark up because it's the combination of very formal or language but also natural language that's tough to the same marker so in such a way that get to databases or get numerically represented using RDF so when you get phrases like extremely rarely yellow the often shall we joined around the node no reserved this kind of fuzzy stuff in hard margin part bottom-up uncle aunt Labrus or weeklies pure pursuits is so you have this wonderful combination of terms like Laplacian pursuits which means something very specific but with these words like weekly so so that the the this pretty this a proposal is to introduce a few elements on their face a we're saying he's saying you know this is categorical element to saying well here is a but that be but you can call it a catalog of the the character of it's not something that something is systemic the stem color is what's being referred to here and luckily there is a plant ontology that we can point to say what category of of all feature that that we're talking about and has a states so the stem color is greenish fans the not there is a not always all told to report greenish out there somewhere around and said so for the categorical things you have that then you can also address the quantitative features latest measurements on hearing of the stick you'll with which is on prequential mm and and so will be testing and hopefully that that we can you and this might serve to be a part of a lightweight yet on effective way to address these types of of this the 2nd language OK on In the
wrapper text but well near there's been some challenges but we we maintain the current sourceforge notes cumbersome uh 88 per variety of reasons some they I had like to move it to something better thinking maybe get out of not sure yet on dependent and then there's that there's that settlements of road infrastructure but that would be on the other maintenance these of governance and administrative maintenance is also very challenging the policy and where all this is all-volunteer effort we all have to other jobs librarian donor it's a tube but diplomatic status of Toronto is that a lot of things to take care of then we don't have we do actually some funny now we don't we're not all
wash and funding so that there's nothing really painful context of development on but it is it is supported by under the under the except the part is getting these grants and the funding we can hopefully direct some of the some of the funds that way in then a dimensionless this might might up to 2 years ago and so means that the great challenge on my 1st the created text but you I naively focused on the state the the extension and that's the easy part but it really it in especially because some Jax's is made in such a way that was designed very well to enable extensions it's very doable I but that's not the that that is the use of easy partners at the sum the sum total of what AT an extension or a DTD or standard or whatever you wanna call this the documentation is really critical to work it to explaining what stuff is what we do and how to use it all and that mutation of a structure is not that great right now we we use some of these comments and in the extension with some ad hoc marker that is used by I believe a perl scripts and CBI has to generate the online additional documentation of it's a cumbersome process of as I mentioned here put it there and I've got ascended to chairman and she runs the conversion like this was that kind of person somewhere on but looking for a better way do that we also maintain around the entation analytical species ID which is the cause project on which actually I recently found found this and moved on
yeah the here's local because that of a 2nd so here's the documentation is just like the ordinary Gestalt entation of other elements in the standard the I should point out also the walk up the nodes in the prison of namespace prefix with the text of elements this was we have decided to the keep the extension in its own namespace just to distinguish it better in preventing clashes with the the with the general on the so that we have this never documentation the periodic is generated the when I get back to and them and then but
these around this its dark entations also on hand this week he became a geographical Biodiversity Information Facility with which I just found that is
maintaining a on her collection of vocabularies and in the domain so very happy to see that it's on the Sun G wiki on in the value here is that if people can come in and out
examples and look for collaborative earlier in the documentation the and so
on and a shift years to the other side of the some presentation and this is the sort of less authority to speak about so you're with me out of all the parliament locally but can have this that is the present imagine of append sort of sort of publisher on hands and keys is their major Journal on publishing the taxonomic literature after 1 zoologist logical form of some literature on its as valid mostly over 20 20 years ago so and how that the duties the Journal was launched 4 years ago all it's an open pull the open-access journal taxonomy in spending on very productive and successful last year's on very very forward-looking and the ends in 1 take advantage of all the new technologies that can and he answered so they register any new names in the bankers will registry of what remains on and supply data to assess the life quality of true positive rate In species ID which is a video that I'll work on species descriptions of the I am a librarian and of most of all of these things but not all all but the cross at members of the should realize solemn I assign it this is this is my in calculating the vector and that in there the during their 1st indexing I'm still here in Scopus and lovable don't most of want blob of love this 1 the principal and that is I have 1 of the 1 of our I think our from our proudest achievements is that all is that on was accused is actually of became I believe the 1st at some internal tension of the central it's that's all achievement very proud of on and then ideas that this construct structural system which is 2nd all based work well and that drives all this stuff on for that and that it it's very productive and as of see by this chart
but there's been no nice approach Reynolds with a Steria step in 2010 but we have these the pages there are coming out from in people publishing is accusing and they're very active From this for years also
can do my best with this good but this is not a nice chart but the laying out the landscape here so I when there is in that basically this with the text of the Treaty of energy delivered public respect the publishing and sort of for soccer literature there's other schemas tax act which is not schema and co-author of text that cause has an editor that helps to to mark up the stuff it also the system scratch pads and things like that that were the data goes and then this perspective publishing that goes through and starts mark-up tool what what what the it's automated submission injury automated and both it the Met major axis here is that this the doubt that when it's all brought together in this format it's going to it's the dad is
going all sorts of places as playing lots of of unwanted roles in different in different areas then there is this feedback also to these other systems as well 4 stages submission peer-review publication and dissemination and each with their own challenges so the tolerate so I here is my slides showing so here here's a basically here you have a treatment so it's like in print sections of it so he
had you numerator section and that goes to the bank which is erratic and registries involved 1 of on that in the references goods involved in the light of the parish library the on the use of use that in description the descriptive world morphological description area on with the wonderful terms like you know to Lisa I brownish this suffuse of walk along a bottle margins all stuff on that undergo studio all this into there's there's a species pages species ideas the this which does essentially the same thing and the and the entire distant charging interest positive past images go to deal well alongside and descriptions and and so the species pages and and is also more bank which is a database from images specimens plus metadata um a very large and and of resource in this area on the currents data from which is where the materials collected goes into on geographical like Biodiversity Information Facility and when it's done right on can be mapped with all this long stuff becomes mappable on the worth of other resources so in here this is all the again the goal was to not to be opened in both senses open open access and legal sense but also open in sense of the VAD open and able to be on manipulated reuse of widely
OK so this is so run through what from PenSoft has done in terms display news articles on OK so some semantic enhancements as was column right appear point out there's these stats that allow you to highlight in the oracle the treatments attacks on the citations balanced so some of this book yeah so we put an localities give a list of the taxes the described in the article and they're not actually stands
where this this past lost in in has been collected from
um it's 1 of the key here what
every set of the key species so that we talked but he's a diagnostic tool to where you have something to have an animal with something in front of you you all the sets of instructions to figure out what it is for them to hear the figure mentions the figure of the course is going to
don't in God suppose you know it's
part of this might publishers got more
also I then have citation Sharkey 2007 and that the citation things on such as the means the taxes so but if you follow this arm footnote it my you might like to detect it doesn't it should you lots of much sure and so you have a and mentioned attacks on practices of large high ranking the taxonomic tens the from that you can get different
explanations of what I'm after this on this case it's pet sort has a thing called Tag some profile which the piece that gives information about on the organisms dependencies and sobs profile of an opera hymenopteran answer wasps and bees and you can see the very widespread that probably in this room of the the sugars and get somewhere in here nearby of so and then that is another once a
lot with and a and here you can find you can follow follow references so monomer biodiversity library they're all over the place and so you so animal block underlined in their go into
publication about them In DHL the the end of so it's
1 but that's basically you get when you get a sense of what we we want the articles but the finished
published point out is back there as mentioned yesterday the that is challenge and there's a link right to decide you can get the action of the of hands up posts the x and the loss of PDF of it's very easy to get to so it's not something that that's publishing they're hiding it's right up there also anyone can anyone can grab the extent of so as I mentioned on music he's been archived in PubMed Central and they happily Tom and that we because
to make the ship sections giving you well so that is extracted out of these chose examine sections of this year so that's
what well the 1st now now I
have I have 3 minutes and good for 4 minutes the most promise there is this a
selected Tronic book that you can get falls of presentation off the I but when there's a there's there's a species stations to ugly but I think what really
long antennas but the and then the other
other material treatments streams that by Solutrean scope of voluntary in past work we have something over 10 thousand treatment of different organisms now that are the referable directly in the XML the work for them a group and then earlier this is
interesting and so paper it is deeper and the authors simultaneously published you Journal into a wiki on the same time the and so here here's the
problem here is the actual articles you see on the keys that there's but not link to the country and this the witty and video that as
mentioned here is derived from the article on the sometimes publication this allows collaborative being gravity work on the species as well as having the officials peer-reviewed article
so this isn't just show up at because she this species is the of the wiki and
that is also given that provided to which species in the Wikimedia Commons was which
species page In in commons all constant pictures of bugs um
with was small response 1 of the you what this with and note note here the the abstract PDF of length to to get to the article for this but from from the the species the OK so on speed this
up the this will Mossman set of constants that they're working on the working on tool to help authors create unflappably right these types of particles of the law of all community based on the peer-review of fans and then that they're very much of his up his very much interested in data journalists of so so publishing
arm just publishing at publications and through the use cases and from small data but also of all sorts of of all sorts the clever tool the web interface of to help you structure
to help you create the trade your article of persons commentaries in the collaborators commenters while the publication process the so here's where you look at your stream information of high level the subsection on the
content and then this might be a part
presentations OK so then why wise from under over time now but I think I have 5 minutes but itself we have a this gives a hymenopterans sees the caption of the this his lab this curious about this right so this is the treatment given below where's the peer-review process and a lot of wonderful depiction I then love all the articles published in PDF form great the but there's this underlying data that this means that we all want and there's my few upon the prestige that I don't know what this means I I I my theory is that it that is a crossover agree and that the paper is dead the book instead and M and them as as in the when the world everyone will know the cell to reveal
the doubt that's underneath the publication
but and then yes and share the primary data to enable the use of later I
know yeah and then do some quick facts about the death of no upper limit on the edge of size very important in the previously the metadata the published attacks on the heart very limited history references and offers on collaboration Collaboration
community of humanity foreign standard-compliant yes and the word on Coursera arm in code compliance features that that this will be
done in such a way that the height of the various number of codes the what the stuff goes in the manuscript a lot of structured those places as well but I think I have an infant his that's all because of the structure
the structure of the data the In the case was it comes back on the lessons learned
of yes this is do the means a challenge the market current state as very the challenge all that lat-long collect information of this other information in the capital palate is very very difficult and parts of identifying that free not getting the original data on Lorena cost efficiency of water is going to cost of the physical process and the from all this flights cannot be overstated that it's more likely that you're not in the it's it's hard to get offers to provide data that provide provide them markers of performing rights and so on you can either given the sentence you tools of but also probably recognize it is be spent a neutral process this and all this last point is can't be overstated the result of some publishers 25 journals are very very on a small scale I stress shoestring budgets stand out done in the very habits so my changing this may be may not be cheated turning area supertanker but sometimes hard even to return a dinghy if all you need is history the
technical puts a yes vote a point not easy citing part particle lattice and
this Donetsk and this is the only William Donaldson and very strong inaccurate claim that really be this this is really the only way to go on for the room missing for the species have all but we don't know that we don't know the owner of parents been few
there was no time for 1 or 2 questions but just comment I'd like to congratulate you and I'm blown everybody else involved I think this is exactly a brilliant example of what a journal should be about and you done in a particular area everybody else damage to it in there particular areas subjects were like the neuronal that you had the so get a thank you very much be
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Element <Mathematik>
Computeranimation
Invariante
Gefangenendilemma
Knotenmenge
Analog-Digital-Umsetzer
Ganze Abschließung
Gammafunktion
Standardabweichung
Domain-Name
Vorlesung/Konferenz
Extrempunkt
Wiki
Computeranimation
Gammafunktion
Autorisierung
Videospiel
Schlüsselverwaltung
Ortsoperator
Tragwerk
Dienst <Informatik>
Bitrate
Kombinatorische Gruppentheorie
Mathematische Logik
Quick-Sort
Computeranimation
Homepage
Videokonferenz
Metropolitan area network
Physikalisches System
Deskriptive Statistik
Bildschirmmaske
Numerische Taxonomie
Hauptideal
Automatische Indexierung
Reynolds-Zahl
Schlüsselverwaltung
ART-Netz
Verschiebungsoperator
Rückkopplung
Subtraktion
Dichte <Stochastik>
Physikalischer Effekt
Dokumentenserver
Beschreibungssprache
Hochdruck
Datenmanagement
Kartesische Koordinaten
Physikalisches System
Quick-Sort
Computeranimation
Rechenschieber
Energiedichte
Texteditor
Dämpfung
Flächeninhalt
Perspektive
Dateiformat
Vorlesung/Konferenz
Garbentheorie
Graphiktablett
Randverteilung
Punkt
Ortsoperator
Wort <Informatik>
Kardinalzahl
Term
Computeranimation
Homepage
Spezialrechner
Metadaten
Deskriptive Statistik
Mathematische Morphologie
Programmbibliothek
Diffusor
Bildgebendes Verfahren
ART-Netz
Konfigurationsdatenbank
Dichte <Stochastik>
Materialisation <Physik>
Datenhaltung
Güte der Anpassung
Stellenring
Strömungsrichtung
Statistische Analyse
Mailing-Liste
Flächeninhalt
Rechter Winkel
Offene Menge
Garbentheorie
Orakel <Informatik>
Metropolitan area network
Menge
Negative Zahl
E-Funktion
Figurierte Zahl
Schlüsselverwaltung
Computeranimation
Gammafunktion
Zehn
Mereologie
Grundsätze ordnungsmäßiger Datenverarbeitung
DTD
Computeranimation
Gammafunktion
Selbst organisierendes System
Informationstechnik
Programmbibliothek
Applet
Profil <Aerodynamik>
p-Block
E-Funktion
Quick-Sort
Computeranimation
Gammafunktion
Zentralisator
Tabusuche
Einfügungsdämpfung
Punkt
COM
Rechter Winkel
Ganze Abschließung
Gruppe <Mathematik>
Gruppenoperation
DTD
Dichte <Stochastik>
E-Funktion
Binder <Informatik>
Computeranimation
Offene Menge
Güte der Anpassung
Kombinatorische Gruppentheorie
RFID
Computeranimation
Stochastische Differentialgleichung
Checkliste
Arbeitsplatzcomputer
ART-Netz
Vorlesung/Konferenz
Garbentheorie
ART-Netz
Implementierung
Autorisierung
Streaming <Kommunikationstechnik>
Subtraktion
Selbst organisierendes System
ART-Netz
Gruppenkeim
DTD
Content <Internet>
Programmierumgebung
Wiki
Computeranimation
Gammafunktion
Gravitation
Kollaboration <Informatik>
Content <Internet>
Programmierumgebung
Schlüsselverwaltung
ART-Netz
Computeranimation
Gammafunktion
Inklusion <Mathematik>
Dicke
Abstraktionsebene
Dichte <Stochastik>
Computeranimation
Homepage
Programmfehler
Konstante
Font
COM
Endogene Variable
ART-Netz
ART-Netz
Autorisierung
Benutzeroberfläche
Prozess <Informatik>
Gesetz <Physik>
Quick-Sort
Computeranimation
RFID
Konstante
Checkliste
Menge
Fächer <Mathematik>
Datentyp
Vorlesung/Konferenz
Partikelsystem
Datenstruktur
Implementierung
Darstellung <Mathematik>
Prozess <Physik>
Zellularer Automat
Dichte <Stochastik>
Kombinatorische Gruppentheorie
Cross over <Kritisches Phänomen>
Physikalische Theorie
Computeranimation
Übergang
Streaming <Kommunikationstechnik>
Bildschirmmaske
Kollaboration <Informatik>
Rechter Winkel
Mereologie
Information
Inhalt <Mathematik>
Peer-to-Peer-Netz
Inklusion <Mathematik>
Prozess <Informatik>
Kontrollstruktur
Dublin Core
Code
Template
Computeranimation
Inverser Limes
Metadaten
Kollaboration <Informatik>
Standardabweichung
Code
Speicherabzug
Inverser Limes
Vorlesung/Konferenz
Wort <Informatik>
Versionsverwaltung
Peer-to-Peer-Netz
Resultante
Zentrische Streckung
Wiki
Prozess <Physik>
Punkt
Beschreibungssprache
Wasserdampftafel
Zahlenbereich
Strömungsrichtung
Computeranimation
Metropolitan area network
Spezialrechner
Flächeninhalt
Rechter Winkel
Mereologie
Codierung
Vorlesung/Konferenz
Information
Datenstruktur
Aggregatzustand
Offene Menge
Webforum
Punkt
Computeranimation
Verbandstheorie
Flächeninhalt
Mereologie
Vererbungshierarchie
ART-Netz
Vorlesung/Konferenz
Partikelsystem
ART-Netz
Gammafunktion

Metadaten

Formale Metadaten

Titel Implementation of TaxPub, an NLM DTD Extension for Domain-specific Markup in Taxonomy, from the Experience of a Biodiversity Publisher
Serientitel JATS-Con 2012
Teil 12
Anzahl der Teile 16
Autor Penev, Lyubomir
Catapano, Terence
Agosti, Donat
Georgiev, Teodor
Sautter, Guido
Pavel Stoev,
Lizenz CC-Namensnennung 3.0 Unported:
Sie dürfen das Werk bzw. den Inhalt zu jedem legalen Zweck nutzen, verändern und in unveränderter oder veränderter Form vervielfältigen, verbreiten und öffentlich zugänglich machen, sofern Sie den Namen des Autors/Rechteinhabers in der von ihm festgelegten Weise nennen.
DOI 10.5446/30574
Herausgeber River Valley TV
Erscheinungsjahr 2016
Sprache Englisch
Produktionsjahr 2012
Produktionsort Washington, D.C.

Inhaltliche Metadaten

Fachgebiet Informatik
Abstract TaxPub was created as an XML extension to the general JATS to provide domain-specific markup for prospective publishing in the area of biological systematics. The core idea of the schema is to delimit descriptions of taxa, or treatments, within an article, and to use these individual portions of information for various purposes. TaxPub was developed in a close cooperation between the author (Terence Catapano), a community interested in such markup (Plazi), the NLM JATS group and a journal publisher (Pensoft). Since July 2009, TaxPub has been routinely implemented in the everyday publishing practice of Pensoft, to provide: (1) Semantically enhanced, domain-specific XML versions of articles for archiving in PubMedCentral (PMC); (2) Visualization of taxon treatments on PMC; (3) Export of taxon treatments to various aggregators, such as Encyclopedia of Life, Plazi Treatment Repository, and the Wiki Species-ID.net.

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